Phylogenetic analysis

Biosafety classification is based on U.S. Public Health Service Guidelines, it is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country.

Karst Cave, Slovenia, 2007

Phylogenetic analysis

Growth condition: Monoxenic with ATCC 13048 Enterobacter aerogenes

Temperature: 20-22.0°C

1.xa0 Allow cells to form cysts.xa0 Harvest cells from a culture which is at or near peak density by adding 5 ml fresh ATCC medium 5080 (Drylx92s Solution) and washing cells into suspension.xa0 Rub the surface of the plate with a spread bar to detach adhering amoebae.

2.xa0xa0 Transfer the liquid medium to a sterile centrifuge tube.

3.xa0 If the cell concentration does not exceed 2 x 10⁶ cells/ml adjust the suspension to that concentration.xa0 To adjust the concentration, centrifuge at 600 x g for 5 min and resuspend the pellet in the volume of fresh medium required to yield 2 x 10⁶.

4. xa0 While cells are centrifuging prepare a 15% (v/v) solution of sterile DMSO as follows: Add the required volume of DMSO to a glass screw-capped test tube and place it in an ice bath.xa0 Allow the DMSO to solidify.xa0 Add the required volume of refrigerated medium.xa0 Dissolve the DMSO by inverting the tube several times.xa0

*NOTE: If the DMSO solution is not prepared on ice, an exothermic reaction will occur that may precipitate certain components of the medium.

5.xa0 Mix the cell preparation and the DMSO in equal portions. Thus, the final concentration will be at least 10⁶ cells/ml and 7.5% (v/v) DMSO.xa0 The equilibration timexa0 (the time between addition of DMSOxa0 and the start ofxa0 the cooling cycle) should be no less than 15 min and no longer than 60 min.

6.xa0xa0 Dispense in 0.5 ml aliquots into 1.0 - 2.0 ml sterile plastic screw-capped cryules (special plastic vials for cryopreservation).

7. Place vials in a controlled rate freezing unit. From room temperature cool at -1°C/min to -40°C. If freezing unit can compensate for the heat of fusion, maintain rate at -1°C/min through heat of fusion. At -40°C plunge ampules into liquid nitrogen.

8.xa0 The frozen preparations are stored in either the vapor or liquid phase of a nitrogen freezer.

9.xa0xa0 To establish a culture from the frozen state place an ampule in a water bath set at 35°C (2-3 min). Immerse the vial to a level just above the surface of the frozen material. Do not agitate the vial.

10.Immediately after thawing, aseptically remove the contents of the ampule and distribute to the center of a fresh plate of ATCC medium 711.xa0 Distribute the material evenly over the plate using a spread bar.xa0 Incubate at 25°C.