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pR16.11 purified plasmid DNA

货号 TS190559
中文名称 null
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产品名称: pR16.11 purified plasmid DNA
商品货号: TS190559
Designations: pR16.11 purified plasmid DNA
GenBank Number:

L24917

Species: HRV type 16 molecular clone
Depositors: W Lee
Applications:
Contains full-lengthxa0sequence
Vector: Construct Size (Vector + Insert) (kB): 9.460xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0
Host required: E. coli MV1193
Host medium: LB broth with 50 µg/mL ampicillin (ATCC Medium #1227)
Type of vector:xa0 E. coli plasmid
Name of vector:xa0 pUC19 + T7 promoter
Vector size (kb):xa0 nucleotides 1 to 400 and 2678 to 2686 were deleted in the cloning process.
Markers (ie. AMPR):xa0 AMPR
Cloning site:xa0 BamHI
Insert: Insert: Human rhinovirus (HRV) type 16 cDNA
Classification:xa0 Picornavirus, Rhinovirus, Human
Insert description (full-length, etc.):xa0 full-length HRV 16 cDNA
Insert size (kb):xa0 7.124 kb + poly A tail
Full/partial sequence available (ie. GenBank #): L24917, with differences noted (J. Virology 77: 6235-6244, 2003)

Markers (genes and/or restriction sites):
Enzymexa0 # sitesxa0 Fragment Lengthxa0 Location of Cuts
BamH1xa0xa0xa0xa0xa0xa0xa0 2xa0xa0xa0xa0xa0xa0xa0xa0xa0 6455; 3005xa0xa0xa0xa0xa0xa0xa0xa0xa0
Pst1xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0 3xa0xa0xa0xa0 6298; 2365; 527
Kpn1xa0xa0xa0xa0xa0xa0xa0xa0xa0xa0 3xa0xa0xa0xa0 4452; 4002; 1006
BgIIIxa0xa0xa0xa0xa0xa0xa0xa0xa0xa0 4xa0xa0xa0 5085;2045;1864;466
Insert Size (kb): 7.124 kb + poly A tail
Biosafety Level: 2

Biosafety classification is based on U.S. Public Health Service Guidelines, it is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country.

Shipping Information: 200 ng dried plasmid DNA
Comments:

This full-length infectious clone is not published yet although the sequence was published (Virus Gene 9:177-181, 1995).


The first base of the HRV 16 genome was ligated to the last base of the T7 promoter. The HRV 16 genome has a poly (A) track of 52 As at the 3 end.xa0


The full-length T7 transcripts of HRV 16 generated from this construct had a specific infectivity of about 5 x 106 PFU/µg, which is similar to the virion RNA.


The complete insert was found to differ from the GenBank sequence L24917 as follows (position in VRMC-8 sequence and base): 715 C, 2266 G, 2267 G, 2393 G, 2419 G, 2620 G, 2795 A, 3324 A, 3640 C, 3652 C, 4678 A, 4878 G, 4914 A, 5341 G, 6150 G, 6394 T, 6457 A, 6511 A. RefLee WM, Wang W. Human rhinovirus type 16: mutant V1210A requires capsid-binding drug for assembly of pentamers to form virions during morphogenesis. J. Virol. 77: 6235-6244, 2003. PubMed: 12743280

References:

Stewart AR, et al. Sequence analyses of human tumor-associated SV40 DNAs and SV40 viral isolates from monkeys and humans. J. Neurovirol. 4: 182-193, 1998. PubMed: 9584955

Lednicky JA, et al. Natural simian virus 40 strains are present in human choroid plexus and ependymoma tumors. Virology 212: 710-717, 1995. PubMed: 7571441

Lee WM, et al. Complete sequence of the RNA genome of human rhinovirus 16, a clinically useful common cold virus belonging to the ICAM-1 receptor group. Virus Genes 9: 177-181, 1995. PubMed: 7732663

Lee WM, Wang W. Human rhinovirus type 16: mutant V1210A requires capsid-binding drug for assembly of pentamers to form virions during morphogenesis. J. Virol. 77: 6235-6244, 2003. PubMed: 12743280