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| NCIMB number | NCIMB 8944 |
| Deposit type | Bacteria |
| Type strain | No |
| GMO | No |
| Taxon name | Paracoccus denitrificans |
| Preservation method | Lyophilised |
| Preserved as | Micrococcus denitrificans |
| Price band | A |
| Media | 001 |
| Gas regime | aerobic |
| Growth factors (and/or information) | CM3, 30C, 2d: good growth, soft, easily dispersed, large and small colonies |
| ACDP category | 1 |
| Colony Edge | Entire |
| Colony Surface | Smooth |
| Colony Shape | Circular |
| Colony Elevation | Convex |
| Colony Colour | Off White |
| Colony Opacity | Almost Opaque |
| Cellular Shape | Rod |
| Cellular Size | short |
| Cellular Arrangement | Groups |
| Cellular Motility | No |
| Gram stain | Gram Variable |
| Depositor Name | J.Lascelles |
| Depositor Company | University of Oxford |
| Depositor Address | Oxford U.K. |
| Source | Garden soil |
| Isolated by | Kluyver & Verhoeven |
| Date of Accession | 01/08/1958 |
| History | W.Verhoeven -- A.L.Koster(LMD) |
| Other collection IDs | ATCC19367 CCM982 CIP71.11 IFO13301 IMET10414 IMG1627 LMD52.44 LMG4049 LMG4219 NRRLB-3785 USCC1573 |
| Yeast? | False |
| K12 | No |
| References | Verhoeven W., Koster A.L. and Nievelt M.C.A.. (1954) Antonie van Leeuwenhoek J. Microbiol. serol. 20 pp273-284. Studies on true dissimilatory nitrate reduction. III. Micrococcus denitrificans Beijerinck, a bacterium capable of using molecular hydrogen in denitrification. Kluyver A.J. and Verhoeven W. (1954) Antonie van Leeuwenhoek J. Microbiol. Serol. 20 p337. Studies on true dissimilatory nitrate reduction. IV. On adaptation in Micrococcus denitrificans. Chang J.P. and Morris J.G. (1962) J. gen. Microbiol. 29 pp301-310. Studies on the utilisation of nitrate by Micrococcus denitrificans. Baird Parker A.C. (1965) J. gen. Microbiol. 38 p375 Naik M.S. and Nicholas J.D. (1966) Biochim. Biophys. Acta 113 p490. Rosypal S., Rosypalova A. and Horejs J. (1966) J. gen. Microbiol. 44 pp281-292. The classification of micrococci and staphylococci based on their DNA base composition. Lam Y. and Nicholas D.J.D. (1969) Biochim. biophys. Acta. 172 pp450-461. Aerobic and anaerobic respiration in M. denitrificans. Lam Y. and Nicholas D.J.D. (1969) Biochim. biophys. Acta. 180 pp459-472 John P. and Hamilton W.A. (1971) Eur. J. Biochem. 23 p528. Release of respiratory control in particles from M. denitrificans by ion translocation antibiotics. Dunstan P.M. et al (1972) Biochem J. 128 pp99 & 107. Microbial metabolism of C1 and C2 compounds. Sleytr U. (1973) J. appl. Bact. 36 p19 Bamforth C.W. and Quayle J.R. (1978) Arch. Microbiol. 119 pp91-97. Aerobic and anaerobic growth of Paracoccus denitrificans on methanol. Auling G., Dittbrenner M., Maarzahl M., Nokal T. and Reh M. (1980) Int. J. syst. Bact. 30 pp123-128. Deoxyribonucleic acid relationships among hydrogen-oxidising strains of the genera Pseudomonas, Alcaligenes and Paracoccus. Nokhal T.-H. and Schlegel H.G. (1983) Int. J. syst. Bact. 33 pp26-37. Taxonomic study of Paracoccus denitrificans. Fems. Microbiol. Lett. 1996, vol 137, no 1, pp 95-101 Rainey F A et al IJSB (1999) 49 645-651 A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. IJSEM, Oct 2006; 56: 2495 - 2500. (Unknown), Antonie van Leuwenhoek 45, 185, 1979 (Unknown), Arch Mikrobiol 53, 132, 1956 (Unknown), Int J Syst Bacteriol 16, 72, 1966 Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov, Int J Syst Bacteriol 44(3), 427-434, 1994 A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov, Int J Syst Bacteriol 49 Pt 2, 645-651, 1999 Proposal to reject the genus Hydrogenomonas: Taxonomic implications, Int J Syst Bacteriol 19, 375-390, 1969 Taxonomic studies on some gram negative polarly flagellated "hydrogen bacteria" and related species, Arch Mikrobiol 70(1), 1-13, 1970 Nitric oxide reductase (norB) gene sequence analysis reveals discrepancies with nitrite reductase (nir) gene phylogeny in cultivated denitrifiers, Environ Microbiol 9(4), 1072-1077, 2007 The incidence of nirS and nirK and their genetic heterogeneity in cultivated denitrifiers, Environ Microbiol 8(11), 2012-2021, 2006 A list of type and reference strains of bacteria, Int J Syst Bacteriol 16, 1-134, 1966 3-Hydroxybutyrate oligomer hydrolase and 3-hydroxybutyrate dehydrogenase participate in intracellular polyhydroxybutyrate and polyhydroxyvalerate degradation in Paracoccus denitrificans, Appl Environ Microbiol 80(3), 986-993, 2014 A novel enzyme, D-3-hydroxyaspartate aldolase from Paracoccus denitrificans IFO 13301: purification, characterization, and gene cloning, Appl Microbiol Biotechnol 62(1), 53-60, 2003 Folia Fac, Sci Nat Univ Purkynianae Brun Chem 3, 78-110, 1962 Mutagenesis of the gene encoding amicyanin of Paracoccus denitrificans and the resultant effect on methylamine oxidation, FEBS Lett 275(1-2), 217-220, 1990 Mutagenesis of the gene encoding cytochrome c550 of Paracoccus denitrificans and analysis of the resultant physiological effects, J Bacteriol 172(2), 986-996, 1990 Mutagenesis of the gene encoding cytochrome c550 of Paracoccus denitrificans and analysis of the resultant physiological effects, J Bacteriol 172(6), 3534, 1990 Paracoccus denitrificans aromatic amino acid aminotransferase: a model enzyme for the study of dual substrate recognition mechanism, J Biochem (Tokyo) 121(1), 161-171, 1997 Studies on the utilization of nitrate by Micrococcus denitrificans, J Gen Microbiol 29, 301-310, 1962 The autotrophic growth of Micrococcus denitrificans on Methanol, Biochem J 150(3), 569-571, 1975 |
| PubMed Publication | https://www.ncbi.nlm.nih.gov/m/pubmed/10319488 |