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| NCIMB number | NCIMB 11627 |
| Deposit type | Bacteria |
| Type strain | Yes |
| GMO | No |
| Taxon name | Paracoccus denitrificans |
| Depositor designation | Stanier381 |
| Preservation method | Lyophilised |
| Price band | A |
| Media | 001 |
| Gas regime | aerobic |
| Growth factors (and/or information) | CM3, 30C, 48hr: (Lab 8 - 24hr - microscopic cols, 2d - 0.25mm, 3d - 1.5mm, trace pigmented, trace brown diffusible pigment) |
| ACDP category | 1 |
| Colony Edge | Entire |
| Colony Surface | Smooth |
| Colony Shape | Circular |
| Colony Elevation | Low Convex |
| Colony Colour | Off White/Pale Cream |
| Colony Opacity | Translucent |
| Cellular Shape | Cocco-Bacillus/Rod |
| Cellular Motility | No |
| Gram stain | Gram Negative |
| Depositor Company | American Type Culture Collection (ATCC) |
| Depositor Address | 12301 Parklawn Drive Rockville Maryland 20852 U.S.A. |
| Source | Garden soil by enrichment with 5% K-Na-tartrate + 2% KNO3 |
| Isolated by | M.W.Beijerinck & D.C.J. Minkman |
| Date of Isolation | 01/01/1909 |
| Date of Accession | 01/12/1980 |
| History | R.Y.Stanier -- C.B.van Niel -- LMD -- M.W.Beijerinck |
| Other collection IDs | ATCC17741 CIP106400 DSM413 IAM12479 ICPB3979 IMET10380 LMD22.21 LMG4218 |
| Yeast? | False |
| K12 | No |
| References | Davis D.H., Doudoroff M., Stanier R.Y. and Mandel M. (1969) IJSB 19 pp375-390 Davis D.H., Stanier R.Y. and Doudoroff M. (1970) Arch. Mikrobiol. 70 pp1-13. Pichinoty F., Mandel M. and Garcia J.L. (1977) Annls. Microbiol. 128B pp243-251. Auling G., Dittbrenner M., Maarzahl M., Nokal T. and Reh M. (1980) Int. J. syst. Bact. 30 pp123-128. Deoxyribonucleic acid relationship among hydrogen oxidizing strains of the genera Pseudomonas, Alcaligenes and Paracoccus. Nokhal T.-H. and Schlegel H.G. (1983) Int. J. syst. Bact. 33 pp26-37. Taxonomic study of Paracoccus denitrificans. Holtel A. and Kleiner D. (1985) Arch Microbiol. 142 pp285-288. Regulation of methylammonium transport in Paracoccus denitrificans. Husain M. and Davidson V.L. (1987) J. Bact. 169 pp1712-1717. Purification and properties of methylamine dehydrogenase from Paracoccus denitrificans. Rainey F A et al IJSB (1999) 49 645-651 A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. IJSEM (2003) 53:235 IJSEM, Oct 2006; 56: 2495 - 2500. Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima, Int J Syst Bacteriol 45(2), 290-296, 1995 (Unknown), Int J Syst Bacteriol 49, 938, 1999 (Unknown), J Microbiol Meth 8, 259-271, 1988 Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria alpha group, FEMS Microbiol Lett 112, 61-66, 1993 Phylogenetic relationships of the helical-shaped bacteria in the alpha Proteobacteria inferred from 16S rDNA sequences, J Gen Appl Microbiol 43(2), 89-95, 1997 A new freeze-drying method for the preservation of nitrogen-fixing and other fragile bacteria, J Microbiol Methods 8, 259-271, 1988 A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov, Int J Syst Bacteriol 49 Pt 2, 645-651, 1999 Transfer of Thiosphaera pantotropha to Paracoccus denitrificans, Int J Syst Bacteriol 43(2), 363-367, 1993 Paracoccus alcaliphilus sp. nov., an alkaliphilic and facultatively methylotrophic bacterium, Int J Syst Bacteriol 39, 116-121, 1989 A simplified liquid-drying method for the preservation of microorganisms sensitive to freezing and freeze-drying, J Microbiol Methods 12, 125-132, 1990 Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria, Appl Environ Microbiol 62(8), 2888-2896, 1996 Biokatalytische Verringerung der Nitratkonzentration in pflanzlichen Lebensmittelrohstoffen, BioEngin 2, 34-43, 1991 Cloning and characterization of the recA of Paracoccus denitrificans and construction of a recA-deficient mutant, FEMS Microbiol Lett 147(2), 209-213, 1997 Comparative characterization of repABC-type replicons of Paracoccus pantotrophus composite plasmids, Plasmid 48(2), 130-141, 2002 Comparative sequence analysis of 23S rRNA from proteobacteria, Syst Appl Microbiol 18, 164-188, 1995 Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA, Appl Environ Microbiol 68(10), 5017-5025, 2002 Enzymes and genes of taurine and isethionate dissimilation in Paracoccus denitrificans, Microbiology 150(4), 805-816, 2004 Expression of the mau genes involved in methylamine metabolism in Paracoccus denitrificans is under control of a LysR-type transcriptional activator, Eur J Biochem 226(1), 201-210, 1994 Identification and characterization of transposable elements of Paracoccus pantotrophus, J Bacteriol 185(13), 3753-3763, 2003 Is intracytoplasmic membrane structure a generic criterion? It does not coincide with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria, Arch Microbiol 160(5), 358-362, 1993 Nitrite and nitric oxide reduction in Paracoccus denitrificans is under the control of NNR, a regulatory protein that belongs to the FNR family of transcriptional activators, FEBS Lett 360(2), 151-154, 1995 Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N,N-dimethylformamide, Int J Syst Bacteriol 40(3), 287-291, 1990 Paracoccus kocurii sp. nov., a tetramethylammonium-assimilating bacterium, Int J Syst Bacteriol 40(3), 292-296, 1990 Resonance Raman spectroscopy of amicyanin, a blue copper protein from Paracoccus denitrificans, J Biol Chem 263(7), 3303-3306, 1988 The Rhodobacter sphaeroides 2.4.1 rho gene: expression and genetic analysis of structure and function, J Bacteriol 178(7), 1946-1954, 1996 |